Man pages for richelbilderbeek/iedbr
Work With IEDB
| check_disease_names | Check if the 'disease_names' is valid. |
| check_error_query_results | Check that the 'query_results' is a success result |
| check_host_organism_iris | Check if the 'host_organism_iris' is valid. |
| check_max_n_queries | Check if the 'max_n_queries' is valid. |
| check_mhc_allele_name | Check if the 'mhc_allele_name' is valid. |
| check_mhc_allele_names | Check if the 'mhc_allele_names' is valid. |
| check_offset | Check if the 'offset' is valid. |
| check_order | Check if the 'order' is valid. |
| check_query | Check if the 'query' is valid. |
| check_select | Check if the 'select' is valid. |
| check_source_organism_iris | Check if the 'source_organism_iris' is valid. |
| check_structure_type | Check if the 'structure_type' is valid. |
| check_table | Check if the 'table' is valid. |
| check_verbose | Check if the 'verbose' is valid. |
| create_healthy_human_query | Create a query for the IEDB for a linear peptide in a healthy... |
| default_params_doc | This function does nothing. It is intended to inherit is... |
| get_all_b_cell_epitopes | Get all epitopes from a B cell assay |
| get_all_b_cell_epitopes_and_mhc_alleles | Get all epitopes and MHC allele names from a B cell assay |
| get_all_b_or_t_cell_epitopes | Internal function |
| get_all_b_or_t_cell_epitopes_and_mhc_alleles | Internal function |
| get_all_mhc_ligand_epitopes | Get all epitopes from an MHC ligand assay |
| get_all_mhc_ligand_epitopes_and_mhc_alleles | Get all epitopes with MHC alleles from an MHC ligand assay |
| get_all_t_cell_epitopes | Get all epitopes from a B cell assay |
| get_all_t_cell_epitopes_and_mhc_alleles | Get all epitopes from a B cell assay |
| get_selectors | Get all valid values for 'select' |
| get_test_query_results_error | Get a 'query_results' that is an error result, to be used in... |
| is_error_query_results | Determine if the 'query_results' is an error result |
| mhc_allele_name_to_regex | Convert an 'mhc_allele_name' to a regular expression to... |
| query_epitope_search | Query IEDB's 'epitope_search' table |
| query_iedb | Query the IEDB database |
| query_iedb_with_offset | Query the IEDB database from an offset |
| query_mhc_search | Query IEDB's 'mhc_search' table |
| query_to_str | Convert a 'query' to a string |
