create_healthy_human_query: Create a query for the IEDB for a linear peptide in a healthy...

In richelbilderbeek/iedbr: Work With IEDB

Create a query for the IEDB for a linear peptide in a healthy human.

Description

Create a query for the IEDB for a linear peptide in a healthy human. The parameters are in the same order as http://www.iedb.org/

Usage

create_healthy_human_query(
  structure_type = "eq.Linear peptide",
  source_organism_iris = "cs.{NCBITaxon:9606}",
  host_organism_iris = "cs.{NCBITaxon:9606}",
  disease_names = "cs.{healthy}",
  order = "structure_iri"
)

Arguments

structure_type	structure of the epitope, as checked by check_structure_type. Possible values are "Linear peptide", as these are the names used at http://www.iedb.org/
source_organism_iris	the epitope source. Possible value is "NCBITaxon:9606", which denotes Homo sapiens
host_organism_iris	the host. Possible value is "NCBITaxon:9606", which denotes Homo sapiens
disease_names	disease names. Possible value is "healthy"
order	the item by which the query is ordered, as checked by check_order. For bigger queries (i.e. with more than 10k results), order is important to obtain each 10k set of results in the same manner.

Author(s)

Richèl J.C. Bilderbeek

richelbilderbeek/iedbr documentation built on Aug. 21, 2022, 12:12 a.m.