get_all_mhc_ligand_epitopes_and_mhc_alleles: Get all epitopes with MHC alleles from an MHC ligand assay

In richelbilderbeek/iedbr: Work With IEDB

Get all epitopes with MHC alleles from an MHC ligand assay

Description

Get all epitopes with MHC alleles from an MHC ligand assay

Usage

get_all_mhc_ligand_epitopes_and_mhc_alleles(
  max_n_queries = Inf,
  verbose = FALSE
)

Arguments

max_n_queries	maximum number of queries. Use Inf to have no upper limit on this. Lower values are useful for debugging.
verbose	set to TRUE for more output

Value

a tibble tibble with two columns:

• linear_sequence: the linear sequence of the epitope

• mhc_allele_name: the name of the MHC allele

Author(s)

Richèl J.C. Bilderbeek

See Also

• use get_all_b_cell_epitopes_and_mhc_alleles to get all epitopes from a B cell assay

• use get_all_mhc_ligand_epitopes_and_mhc_alleles to get all epitopes from an MHC ligand assay

• use get_all_t_cell_epitopes_and_mhc_alleles to get all epitopes from a T cell assay

Examples

if (pureseqtmr::is_on_ci()) {
  get_all_mhc_ligand_epitopes_and_mhc_alleles(
    max_n_queries = 3
  )
}

richelbilderbeek/iedbr documentation built on Aug. 21, 2022, 12:12 a.m.