get_all_mhc_ligand_epitopes: Get all epitopes from an MHC ligand assay

In richelbilderbeek/iedbr: Work With IEDB

Get all epitopes from an MHC ligand assay

Description

Get all epitopes from an MHC ligand assay

Usage

get_all_mhc_ligand_epitopes(
  mhc_allele_name = "all",
  max_n_queries = Inf,
  verbose = FALSE
)

Arguments

mhc_allele_name	name of an MHC allele
max_n_queries	maximum number of queries. Use Inf to have no upper limit on this. Lower values are useful for debugging.
verbose	set to TRUE for more output

Value

all epitopes

Author(s)

Richèl J.C. Bilderbeek

See Also

• use get_all_b_cell_epitopes to get all epitopes from a B cell assay

• use get_all_mhc_ligand_epitopes to get all epitopes from an MHC ligand assay

• use get_all_t_cell_epitopes to get all epitopes from a T cell assay

Examples

if (pureseqtmr::is_on_ci()) {
  # There are a lot of MHC ligand epitopes,
  # only look through the first 30k
  get_all_mhc_ligand_epitopes(
    max_n_queries = 3
  )
  get_all_mhc_ligand_epitopes(
    mhc_allele_name = "cs.{HLA-A*01:01}",
    max_n_queries = 3
  )
}

richelbilderbeek/iedbr documentation built on Aug. 21, 2022, 12:12 a.m.