query_iedb: Query the IEDB database

View source: R/query_iedb.R

query_iedbR Documentation

Query the IEDB database

Description

Query the IEDB database.

Usage

query_iedb(query, table, max_n_queries = Inf, verbose = FALSE)

Arguments

query

an IEDB query, as created by, for example, create_healthy_human_query. Use check_query to check if the query is valid

table

a IEDB database table, as checked by check_table

max_n_queries

maximum number of queries. Use Inf to have no upper limit on this. Lower values are useful for debugging.

verbose

set to TRUE for more output

Value

a tibble with as much rows as hits.

Note

The IEDB returns 10k hits per query. This means, to get the results of a query of more than 10k hits, the IEDB needs to be queried multiple times. query_iedb combines multiple calls to the IEDB, using query_iedb_with_offset.

Author(s)

Richèl J.C. Bilderbeek


richelbilderbeek/iedbr documentation built on Aug. 21, 2022, 12:12 a.m.