check_bim_table: Check if a '.bim' table is valid.
In richelbilderbeek/plinkr: Interface to PLINK
View source: R/check_bim_table.R
check_bim_table R Documentation
Check if a .bim table is valid.
Description
Check if a .bim table is valid.
Will stop if not
Usage
check_bim_table(bim_table)
Arguments
bim_table
a tibble of the genetic mapping,
with as many rows as SNPs.
Each row contains:
-
chr: the chromosome number
-
id: the SNP ID
-
posg: the position
-
pos: the position
-
ref: something
-
alt: something
Use get_test_bim_table to get a .bim table as used in testing.
Use read_plink_bim_file to read a PLINK .bim file.
Use check_bim_table to test if a .bim table is valid.
Value
Nothing. Will stop if the bim_table is invalid
Author(s)
Richèl J.C. Bilderbeek
Examples
check_bim_table(get_test_bim_table())
check_bim_table(read_plink_bim_file(get_plinkr_filename("toy_data.bim")))
richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.
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View source: R/check_bim_table.R
| check_bim_table | R Documentation |
Check if a .bim table is valid.
Description
Check if a .bim table is valid.
Will stop if not
Usage
check_bim_table(bim_table)
Arguments
bim_table |
a tibble of the genetic mapping, with as many rows as SNPs. Each row contains:
Use get_test_bim_table to get a |
Value
Nothing. Will stop if the bim_table is invalid
Author(s)
Richèl J.C. Bilderbeek
Examples
check_bim_table(get_test_bim_table())
check_bim_table(read_plink_bim_file(get_plinkr_filename("toy_data.bim")))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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