Files in richelbilderbeek/raket
What If Speciation Takes Time?

.Rbuildignore
.gitignore
.travis.yml
CODE_OF_CONDUCT.md CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
R/check_project_folder_name.R R/check_raket_params.R R/check_raket_params_filenames.R R/check_raket_params_list_elements.R R/check_raket_paramses.R R/check_sampling_method.R R/collect_pbd_params.R R/create_general_params_set.R R/create_general_pbd_paramses.R R/create_input_files.R R/create_params_set.R R/create_pbd_params_file.R R/create_pbd_sim_out_file.R R/create_raket_params.R R/create_sampling_params_set.R R/create_test_params_set.R R/create_test_pbd_params.R R/create_test_pbd_paramses.R R/create_test_raket_params.R R/create_true_tree_file.R R/default_param_doc.R R/get_raket_path.R R/nltt_files_to_csv.R R/rkt.R R/rkt_create_data_frame.R R/rkt_get_experiment_types.R R/rkt_get_extinction_rates.R R/rkt_get_max_n_cols.R R/rkt_get_max_n_rows.R R/rkt_get_n_param_combos.R R/rkt_get_n_params.R R/rkt_get_n_replicates.R R/rkt_get_sampling_methods.R R/rkt_get_spec_compl_rates.R R/rkt_get_spec_init_rates.R R/rkt_is_viable.R R/rkt_plot.R R/rkt_run.R R/rkt_run_from_file.R R/run_raket_from_file.R R/to_long.R
R/zzz.R
README.md
appveyor.yml
doc/README.md doc/code_of_conduct.md
doc/dependencies.dot
doc/dependencies.png
doc/dependencies.ps
doc/examples.md doc/faq.md
doc/overview.dia
doc/overview.png
inst/REFERENCES.bib
inst/extdata/parameters.RDa
inst/extdata/pos_gtr.csv
inst/extdata/pos_jc69.csv
inst/extdata/raket_werper/data/1/pbd.fasta
inst/extdata/raket_werper/data/1/pbd.newick
inst/extdata/raket_werper/data/1/pbd_best.log
inst/extdata/raket_werper/data/1/pbd_best.trees
inst/extdata/raket_werper/data/1/pbd_best.xml
inst/extdata/raket_werper/data/1/pbd_best.xml.state
inst/extdata/raket_werper/data/1/pbd_best_twin.log
inst/extdata/raket_werper/data/1/pbd_best_twin.trees
inst/extdata/raket_werper/data/1/pbd_best_twin.xml
inst/extdata/raket_werper/data/1/pbd_best_twin.xml.state
inst/extdata/raket_werper/data/1/pbd_gen.log
inst/extdata/raket_werper/data/1/pbd_gen.trees
inst/extdata/raket_werper/data/1/pbd_gen.xml
inst/extdata/raket_werper/data/1/pbd_gen.xml.state
inst/extdata/raket_werper/data/1/pbd_gen_twin.log
inst/extdata/raket_werper/data/1/pbd_gen_twin.trees
inst/extdata/raket_werper/data/1/pbd_gen_twin.xml
inst/extdata/raket_werper/data/1/pbd_gen_twin.xml.state
inst/extdata/raket_werper/data/1/pbd_marg_lik.csv
inst/extdata/raket_werper/data/1/pbd_marg_lik_twin.csv
inst/extdata/raket_werper/data/1/pbd_nltts_best.csv
inst/extdata/raket_werper/data/1/pbd_nltts_best_twin.csv
inst/extdata/raket_werper/data/1/pbd_nltts_gen.csv
inst/extdata/raket_werper/data/1/pbd_nltts_gen_twin.csv
inst/extdata/raket_werper/data/1/pbd_twin.fasta
inst/extdata/raket_werper/data/1/pbd_twin.newick
inst/extdata/raket_werper/data/10/pbd.fasta
inst/extdata/raket_werper/data/10/pbd.newick
inst/extdata/raket_werper/data/10/pbd_best.log
inst/extdata/raket_werper/data/10/pbd_best.trees
inst/extdata/raket_werper/data/10/pbd_best.xml
inst/extdata/raket_werper/data/10/pbd_best.xml.state
inst/extdata/raket_werper/data/10/pbd_best_twin.log
inst/extdata/raket_werper/data/10/pbd_best_twin.trees
inst/extdata/raket_werper/data/10/pbd_best_twin.xml
inst/extdata/raket_werper/data/10/pbd_best_twin.xml.state
inst/extdata/raket_werper/data/10/pbd_gen.log
inst/extdata/raket_werper/data/10/pbd_gen.trees
inst/extdata/raket_werper/data/10/pbd_gen.xml
inst/extdata/raket_werper/data/10/pbd_gen.xml.state
inst/extdata/raket_werper/data/10/pbd_gen_twin.log
inst/extdata/raket_werper/data/10/pbd_gen_twin.trees
inst/extdata/raket_werper/data/10/pbd_gen_twin.xml
inst/extdata/raket_werper/data/10/pbd_gen_twin.xml.state
inst/extdata/raket_werper/data/10/pbd_marg_lik.csv
inst/extdata/raket_werper/data/10/pbd_marg_lik_twin.csv
inst/extdata/raket_werper/data/10/pbd_nltts_best.csv
inst/extdata/raket_werper/data/10/pbd_nltts_best_twin.csv
inst/extdata/raket_werper/data/10/pbd_nltts_gen.csv
inst/extdata/raket_werper/data/10/pbd_nltts_gen_twin.csv
inst/extdata/raket_werper/data/10/pbd_twin.fasta
inst/extdata/raket_werper/data/10/pbd_twin.newick
inst/extdata/raket_werper/data/11/pbd.fasta
inst/extdata/raket_werper/data/11/pbd.newick
inst/extdata/raket_werper/data/11/pbd_best.log
inst/extdata/raket_werper/data/11/pbd_best.trees
inst/extdata/raket_werper/data/11/pbd_best.xml
inst/extdata/raket_werper/data/11/pbd_best.xml.state
inst/extdata/raket_werper/data/11/pbd_best_twin.log
inst/extdata/raket_werper/data/11/pbd_best_twin.trees
inst/extdata/raket_werper/data/11/pbd_best_twin.xml
inst/extdata/raket_werper/data/11/pbd_best_twin.xml.state
inst/extdata/raket_werper/data/11/pbd_gen.log
inst/extdata/raket_werper/data/11/pbd_gen.trees
inst/extdata/raket_werper/data/11/pbd_gen.xml
inst/extdata/raket_werper/data/11/pbd_gen.xml.state
inst/extdata/raket_werper/data/11/pbd_gen_twin.log
inst/extdata/raket_werper/data/11/pbd_gen_twin.trees
inst/extdata/raket_werper/data/11/pbd_gen_twin.xml
inst/extdata/raket_werper/data/11/pbd_gen_twin.xml.state
inst/extdata/raket_werper/data/11/pbd_marg_lik.csv
inst/extdata/raket_werper/data/11/pbd_marg_lik_twin.csv
inst/extdata/raket_werper/data/11/pbd_nltts_best.csv
inst/extdata/raket_werper/data/11/pbd_nltts_best_twin.csv
inst/extdata/raket_werper/data/11/pbd_nltts_gen.csv
inst/extdata/raket_werper/data/11/pbd_nltts_gen_twin.csv
inst/extdata/raket_werper/data/11/pbd_twin.fasta
inst/extdata/raket_werper/data/11/pbd_twin.newick
inst/extdata/raket_werper/data/12/pbd.fasta
inst/extdata/raket_werper/data/12/pbd.newick
inst/extdata/raket_werper/data/12/pbd_best.log
inst/extdata/raket_werper/data/12/pbd_best.trees
inst/extdata/raket_werper/data/12/pbd_best.xml
inst/extdata/raket_werper/data/12/pbd_best.xml.state
inst/extdata/raket_werper/data/12/pbd_best_twin.log
inst/extdata/raket_werper/data/12/pbd_best_twin.trees
inst/extdata/raket_werper/data/12/pbd_best_twin.xml
inst/extdata/raket_werper/data/12/pbd_best_twin.xml.state
inst/extdata/raket_werper/data/12/pbd_gen.log
inst/extdata/raket_werper/data/12/pbd_gen.trees
inst/extdata/raket_werper/data/12/pbd_gen.xml
inst/extdata/raket_werper/data/12/pbd_gen.xml.state
inst/extdata/raket_werper/data/12/pbd_gen_twin.log
inst/extdata/raket_werper/data/12/pbd_gen_twin.trees
inst/extdata/raket_werper/data/12/pbd_gen_twin.xml
inst/extdata/raket_werper/data/12/pbd_gen_twin.xml.state
inst/extdata/raket_werper/data/12/pbd_marg_lik.csv
inst/extdata/raket_werper/data/12/pbd_marg_lik_twin.csv
inst/extdata/raket_werper/data/12/pbd_nltts_best.csv
inst/extdata/raket_werper/data/12/pbd_nltts_best_twin.csv
inst/extdata/raket_werper/data/12/pbd_nltts_gen.csv
inst/extdata/raket_werper/data/12/pbd_nltts_gen_twin.csv
inst/extdata/raket_werper/data/12/pbd_twin.fasta
inst/extdata/raket_werper/data/12/pbd_twin.newick
inst/extdata/raket_werper/data/2/pbd.fasta
inst/extdata/raket_werper/data/2/pbd.newick
inst/extdata/raket_werper/data/2/pbd_best.log
inst/extdata/raket_werper/data/2/pbd_best.trees
inst/extdata/raket_werper/data/2/pbd_best.xml
inst/extdata/raket_werper/data/2/pbd_best.xml.state
inst/extdata/raket_werper/data/2/pbd_best_twin.log
inst/extdata/raket_werper/data/2/pbd_best_twin.trees
inst/extdata/raket_werper/data/2/pbd_best_twin.xml
inst/extdata/raket_werper/data/2/pbd_best_twin.xml.state
inst/extdata/raket_werper/data/2/pbd_gen.log
inst/extdata/raket_werper/data/2/pbd_gen.trees
inst/extdata/raket_werper/data/2/pbd_gen.xml
inst/extdata/raket_werper/data/2/pbd_gen.xml.state
inst/extdata/raket_werper/data/2/pbd_gen_twin.log
inst/extdata/raket_werper/data/2/pbd_gen_twin.trees
inst/extdata/raket_werper/data/2/pbd_gen_twin.xml
inst/extdata/raket_werper/data/2/pbd_gen_twin.xml.state
inst/extdata/raket_werper/data/2/pbd_marg_lik.csv
inst/extdata/raket_werper/data/2/pbd_marg_lik_twin.csv
inst/extdata/raket_werper/data/2/pbd_nltts_best.csv
inst/extdata/raket_werper/data/2/pbd_nltts_best_twin.csv
inst/extdata/raket_werper/data/2/pbd_nltts_gen.csv
inst/extdata/raket_werper/data/2/pbd_nltts_gen_twin.csv
inst/extdata/raket_werper/data/2/pbd_twin.fasta
inst/extdata/raket_werper/data/2/pbd_twin.newick
inst/extdata/raket_werper/data/3/pbd.fasta
inst/extdata/raket_werper/data/3/pbd.newick
inst/extdata/raket_werper/data/3/pbd_best.log
inst/extdata/raket_werper/data/3/pbd_best.trees
inst/extdata/raket_werper/data/3/pbd_best.xml
inst/extdata/raket_werper/data/3/pbd_best.xml.state
inst/extdata/raket_werper/data/3/pbd_best_twin.log
inst/extdata/raket_werper/data/3/pbd_best_twin.trees
inst/extdata/raket_werper/data/3/pbd_best_twin.xml
inst/extdata/raket_werper/data/3/pbd_best_twin.xml.state
inst/extdata/raket_werper/data/3/pbd_gen.log
inst/extdata/raket_werper/data/3/pbd_gen.trees
inst/extdata/raket_werper/data/3/pbd_gen.xml
inst/extdata/raket_werper/data/3/pbd_gen.xml.state
inst/extdata/raket_werper/data/3/pbd_gen_twin.log
inst/extdata/raket_werper/data/3/pbd_gen_twin.trees
inst/extdata/raket_werper/data/3/pbd_gen_twin.xml
inst/extdata/raket_werper/data/3/pbd_gen_twin.xml.state
inst/extdata/raket_werper/data/3/pbd_marg_lik.csv
inst/extdata/raket_werper/data/3/pbd_marg_lik_twin.csv
inst/extdata/raket_werper/data/3/pbd_nltts_best.csv
inst/extdata/raket_werper/data/3/pbd_nltts_best_twin.csv
inst/extdata/raket_werper/data/3/pbd_nltts_gen.csv
inst/extdata/raket_werper/data/3/pbd_nltts_gen_twin.csv
inst/extdata/raket_werper/data/3/pbd_twin.fasta
inst/extdata/raket_werper/data/3/pbd_twin.newick
inst/extdata/raket_werper/data/4/pbd.fasta
inst/extdata/raket_werper/data/4/pbd.newick
inst/extdata/raket_werper/data/4/pbd_best.log
inst/extdata/raket_werper/data/4/pbd_best.trees
inst/extdata/raket_werper/data/4/pbd_best.xml
inst/extdata/raket_werper/data/4/pbd_best.xml.state
inst/extdata/raket_werper/data/4/pbd_best_twin.log
inst/extdata/raket_werper/data/4/pbd_best_twin.trees
inst/extdata/raket_werper/data/4/pbd_best_twin.xml
inst/extdata/raket_werper/data/4/pbd_best_twin.xml.state
inst/extdata/raket_werper/data/4/pbd_gen.log
inst/extdata/raket_werper/data/4/pbd_gen.trees
inst/extdata/raket_werper/data/4/pbd_gen.xml
inst/extdata/raket_werper/data/4/pbd_gen.xml.state
inst/extdata/raket_werper/data/4/pbd_gen_twin.log
inst/extdata/raket_werper/data/4/pbd_gen_twin.trees
inst/extdata/raket_werper/data/4/pbd_gen_twin.xml
inst/extdata/raket_werper/data/4/pbd_gen_twin.xml.state
inst/extdata/raket_werper/data/4/pbd_marg_lik.csv
inst/extdata/raket_werper/data/4/pbd_marg_lik_twin.csv
inst/extdata/raket_werper/data/4/pbd_nltts_best.csv
inst/extdata/raket_werper/data/4/pbd_nltts_best_twin.csv
inst/extdata/raket_werper/data/4/pbd_nltts_gen.csv
inst/extdata/raket_werper/data/4/pbd_nltts_gen_twin.csv
inst/extdata/raket_werper/data/4/pbd_twin.fasta
inst/extdata/raket_werper/data/4/pbd_twin.newick
inst/extdata/raket_werper/data/5/pbd.fasta
inst/extdata/raket_werper/data/5/pbd.newick
inst/extdata/raket_werper/data/5/pbd_best.log
inst/extdata/raket_werper/data/5/pbd_best.trees
inst/extdata/raket_werper/data/5/pbd_best.xml
inst/extdata/raket_werper/data/5/pbd_best.xml.state
inst/extdata/raket_werper/data/5/pbd_best_twin.log
inst/extdata/raket_werper/data/5/pbd_best_twin.trees
inst/extdata/raket_werper/data/5/pbd_best_twin.xml
inst/extdata/raket_werper/data/5/pbd_best_twin.xml.state
inst/extdata/raket_werper/data/5/pbd_gen.log
inst/extdata/raket_werper/data/5/pbd_gen.trees
inst/extdata/raket_werper/data/5/pbd_gen.xml
inst/extdata/raket_werper/data/5/pbd_gen.xml.state
inst/extdata/raket_werper/data/5/pbd_gen_twin.log
inst/extdata/raket_werper/data/5/pbd_gen_twin.trees
inst/extdata/raket_werper/data/5/pbd_gen_twin.xml
inst/extdata/raket_werper/data/5/pbd_gen_twin.xml.state
inst/extdata/raket_werper/data/5/pbd_marg_lik.csv
inst/extdata/raket_werper/data/5/pbd_marg_lik_twin.csv
inst/extdata/raket_werper/data/5/pbd_nltts_best.csv
inst/extdata/raket_werper/data/5/pbd_nltts_best_twin.csv
inst/extdata/raket_werper/data/5/pbd_nltts_gen.csv
inst/extdata/raket_werper/data/5/pbd_nltts_gen_twin.csv
inst/extdata/raket_werper/data/5/pbd_twin.fasta
inst/extdata/raket_werper/data/5/pbd_twin.newick
inst/extdata/raket_werper/data/6/pbd.fasta
inst/extdata/raket_werper/data/6/pbd.newick
inst/extdata/raket_werper/data/6/pbd_best.log
inst/extdata/raket_werper/data/6/pbd_best.trees
inst/extdata/raket_werper/data/6/pbd_best.xml
inst/extdata/raket_werper/data/6/pbd_best.xml.state
inst/extdata/raket_werper/data/6/pbd_best_twin.log
inst/extdata/raket_werper/data/6/pbd_best_twin.trees
inst/extdata/raket_werper/data/6/pbd_best_twin.xml
inst/extdata/raket_werper/data/6/pbd_best_twin.xml.state
inst/extdata/raket_werper/data/6/pbd_gen.log
inst/extdata/raket_werper/data/6/pbd_gen.trees
inst/extdata/raket_werper/data/6/pbd_gen.xml
inst/extdata/raket_werper/data/6/pbd_gen.xml.state
inst/extdata/raket_werper/data/6/pbd_gen_twin.log
inst/extdata/raket_werper/data/6/pbd_gen_twin.trees
inst/extdata/raket_werper/data/6/pbd_gen_twin.xml
inst/extdata/raket_werper/data/6/pbd_gen_twin.xml.state
inst/extdata/raket_werper/data/6/pbd_marg_lik.csv
inst/extdata/raket_werper/data/6/pbd_marg_lik_twin.csv
inst/extdata/raket_werper/data/6/pbd_nltts_best.csv
inst/extdata/raket_werper/data/6/pbd_nltts_best_twin.csv
inst/extdata/raket_werper/data/6/pbd_nltts_gen.csv
inst/extdata/raket_werper/data/6/pbd_nltts_gen_twin.csv
inst/extdata/raket_werper/data/6/pbd_twin.fasta
inst/extdata/raket_werper/data/6/pbd_twin.newick
inst/extdata/raket_werper/data/7/pbd.fasta
inst/extdata/raket_werper/data/7/pbd.newick
inst/extdata/raket_werper/data/7/pbd_best.log
inst/extdata/raket_werper/data/7/pbd_best.trees
inst/extdata/raket_werper/data/7/pbd_best.xml
inst/extdata/raket_werper/data/7/pbd_best.xml.state
inst/extdata/raket_werper/data/7/pbd_best_twin.log
inst/extdata/raket_werper/data/7/pbd_best_twin.trees
inst/extdata/raket_werper/data/7/pbd_best_twin.xml
inst/extdata/raket_werper/data/7/pbd_best_twin.xml.state
inst/extdata/raket_werper/data/7/pbd_gen.log
inst/extdata/raket_werper/data/7/pbd_gen.trees
inst/extdata/raket_werper/data/7/pbd_gen.xml
inst/extdata/raket_werper/data/7/pbd_gen.xml.state
inst/extdata/raket_werper/data/7/pbd_gen_twin.log
inst/extdata/raket_werper/data/7/pbd_gen_twin.trees
inst/extdata/raket_werper/data/7/pbd_gen_twin.xml
inst/extdata/raket_werper/data/7/pbd_gen_twin.xml.state
inst/extdata/raket_werper/data/7/pbd_marg_lik.csv
inst/extdata/raket_werper/data/7/pbd_marg_lik_twin.csv
inst/extdata/raket_werper/data/7/pbd_nltts_best.csv
inst/extdata/raket_werper/data/7/pbd_nltts_best_twin.csv
inst/extdata/raket_werper/data/7/pbd_nltts_gen.csv
inst/extdata/raket_werper/data/7/pbd_nltts_gen_twin.csv
inst/extdata/raket_werper/data/7/pbd_twin.fasta
inst/extdata/raket_werper/data/7/pbd_twin.newick
inst/extdata/raket_werper/data/8/pbd.fasta
inst/extdata/raket_werper/data/8/pbd.newick
inst/extdata/raket_werper/data/8/pbd_best.log
inst/extdata/raket_werper/data/8/pbd_best.trees
inst/extdata/raket_werper/data/8/pbd_best.xml
inst/extdata/raket_werper/data/8/pbd_best.xml.state
inst/extdata/raket_werper/data/8/pbd_best_twin.log
inst/extdata/raket_werper/data/8/pbd_best_twin.trees
inst/extdata/raket_werper/data/8/pbd_best_twin.xml
inst/extdata/raket_werper/data/8/pbd_best_twin.xml.state
inst/extdata/raket_werper/data/8/pbd_gen.log
inst/extdata/raket_werper/data/8/pbd_gen.trees
inst/extdata/raket_werper/data/8/pbd_gen.xml
inst/extdata/raket_werper/data/8/pbd_gen.xml.state
inst/extdata/raket_werper/data/8/pbd_gen_twin.log
inst/extdata/raket_werper/data/8/pbd_gen_twin.trees
inst/extdata/raket_werper/data/8/pbd_gen_twin.xml
inst/extdata/raket_werper/data/8/pbd_gen_twin.xml.state
inst/extdata/raket_werper/data/8/pbd_marg_lik.csv
inst/extdata/raket_werper/data/8/pbd_marg_lik_twin.csv
inst/extdata/raket_werper/data/8/pbd_nltts_best.csv
inst/extdata/raket_werper/data/8/pbd_nltts_best_twin.csv
inst/extdata/raket_werper/data/8/pbd_nltts_gen.csv
inst/extdata/raket_werper/data/8/pbd_nltts_gen_twin.csv
inst/extdata/raket_werper/data/8/pbd_twin.fasta
inst/extdata/raket_werper/data/8/pbd_twin.newick
inst/extdata/raket_werper/data/9/pbd.fasta
inst/extdata/raket_werper/data/9/pbd.newick
inst/extdata/raket_werper/data/9/pbd_best.log
inst/extdata/raket_werper/data/9/pbd_best.trees
inst/extdata/raket_werper/data/9/pbd_best.xml
inst/extdata/raket_werper/data/9/pbd_best.xml.state
inst/extdata/raket_werper/data/9/pbd_best_twin.log
inst/extdata/raket_werper/data/9/pbd_best_twin.trees
inst/extdata/raket_werper/data/9/pbd_best_twin.xml
inst/extdata/raket_werper/data/9/pbd_best_twin.xml.state
inst/extdata/raket_werper/data/9/pbd_gen.log
inst/extdata/raket_werper/data/9/pbd_gen.trees
inst/extdata/raket_werper/data/9/pbd_gen.xml
inst/extdata/raket_werper/data/9/pbd_gen.xml.state
inst/extdata/raket_werper/data/9/pbd_gen_twin.log
inst/extdata/raket_werper/data/9/pbd_gen_twin.trees
inst/extdata/raket_werper/data/9/pbd_gen_twin.xml
inst/extdata/raket_werper/data/9/pbd_gen_twin.xml.state
inst/extdata/raket_werper/data/9/pbd_marg_lik.csv
inst/extdata/raket_werper/data/9/pbd_marg_lik_twin.csv
inst/extdata/raket_werper/data/9/pbd_nltts_best.csv
inst/extdata/raket_werper/data/9/pbd_nltts_best_twin.csv
inst/extdata/raket_werper/data/9/pbd_nltts_gen.csv
inst/extdata/raket_werper/data/9/pbd_nltts_gen_twin.csv
inst/extdata/raket_werper/data/9/pbd_twin.fasta
inst/extdata/raket_werper/data/9/pbd_twin.newick
inst/extdata/raket_werper/results/pbd_params.csv
man/check_project_folder_name.Rd man/check_raket_params.Rd man/check_raket_params_filenames.Rd man/check_raket_params_list_elements.Rd man/check_raket_paramses.Rd man/check_sampling_method.Rd man/collect_pbd_params.Rd man/create_fig_1.Rd man/create_general_params_set.Rd man/create_general_pbd_paramses.Rd man/create_input_files.Rd man/create_input_files_general.Rd man/create_input_files_sampling.Rd man/create_input_files_test.Rd man/create_params_set.Rd man/create_pbd_params_file.Rd man/create_pbd_sim_out_file.Rd man/create_raket_params.Rd man/create_sampling_params_set.Rd man/create_test_params_set.Rd man/create_test_pbd_params.Rd man/create_test_pbd_paramses.Rd man/create_test_raket_params.Rd man/create_true_tree_file.Rd man/default_params_doc.Rd man/get_raket_path.Rd man/nltt_files_to_csv.Rd man/rkt_are_viable.Rd man/rkt_create_data_frame.Rd man/rkt_get_experiment_types.Rd man/rkt_get_ext_rates.Rd man/rkt_get_max_n_cols.Rd man/rkt_get_max_n_rows.Rd man/rkt_get_n_param_combos.Rd man/rkt_get_n_params.Rd man/rkt_get_n_replicates.Rd man/rkt_get_sampling_methods.Rd man/rkt_get_spec_init_rates.Rd man/rkt_is_viable.Rd man/rkt_run_from_file.Rd man/run_raket.Rd man/run_raket_from_file.Rd man/to_long.Rd
pics/AppVeyor.png
pics/Codecov.png
pics/TravisCI.png
pics/osf_registration_1.png
pics/rocket.png
raket.Rproj
scripts/112.RDa
scripts/2432.RDa
scripts/check_dead_links
scripts/merge
scripts/push
tests/testthat.R tests/testthat/test-check_project_folder_name.R tests/testthat/test-check_raket_params.R tests/testthat/test-check_raket_paramses.R tests/testthat/test-check_sampling_method.R tests/testthat/test-collect_pbd_params.R tests/testthat/test-create_general_params_set.R tests/testthat/test-create_input_files.R tests/testthat/test-create_input_files_test.R tests/testthat/test-create_params_set.R tests/testthat/test-create_pbd_params_file.R tests/testthat/test-create_pbd_sim_out_file.R tests/testthat/test-create_raket_params.R tests/testthat/test-create_sampling_params_set.R tests/testthat/test-create_test_params_set.R tests/testthat/test-create_test_pbd_paramses.R tests/testthat/test-create_test_raket_params.R tests/testthat/test-create_true_tree_file.R tests/testthat/test-get_raket_path.R tests/testthat/test-nltt_files_to_csv.R tests/testthat/test-prerequisites.R tests/testthat/test-rkt_create_data_frame.R tests/testthat/test-rkt_get_experiment_types.R tests/testthat/test-rkt_get_ext_rates.R tests/testthat/test-rkt_get_max_n_rows.R tests/testthat/test-rkt_get_n_param_combos.R tests/testthat/test-rkt_get_n_params.R tests/testthat/test-rkt_get_n_replicates.R tests/testthat/test-rkt_get_sampling_methods.R tests/testthat/test-rkt_get_spec_compl_rates.R tests/testthat/test-rkt_get_spec_init_rates.R tests/testthat/test-rkt_is_viable.R
tests/testthat/test-rkt_plot.R
tests/testthat/test-rkt_run.R tests/testthat/test-rkt_run_from_file.R tests/testthat/test-to_long.R tests/testthat/test-workflow.R
vignettes/.gitignore
vignettes/bio_params.Rmd vignettes/demo.Rmd vignettes/demo.md
vignettes/raket_parameters.csv
richelbilderbeek/raket documentation built on Dec. 31, 2019, 7:41 p.m.