Man pages for richelbilderbeek/raket
What If Speciation Takes Time?
| check_project_folder_name | Check if 'project_folder_name' ends with 'razzo_project' and... |
| check_raket_params | Check if the 'raket_params' are valid raket parameters. |
| check_raket_paramses | Check if the argument is a list of 'raket_params' |
| check_raket_params_filenames | Check is a 'raket_params' hold Peregrine-friendly filenames... |
| check_raket_params_list_elements | Check if the 'raket_params' is a list with all the required... |
| check_sampling_method | Checks if the 'sampling_method' is a valid sampling method.... |
| collect_pbd_params | Collect the PBD parameters from a 'raket' experiment |
| create_fig_1 | Plot violin plot |
| create_general_params_set | Creates the parameter set for the general exploration |
| create_general_pbd_paramses | Create the general PBD parameter sets |
| create_input_files | Creates the parameter files from the 'raket_params' |
| create_input_files_general | Creates the parameter files in the article for the general... |
| create_input_files_sampling | Creates the parameter files in the article for the general... |
| create_input_files_test | Creates the parameter files in the article for the general... |
| create_params_set | Create the set of parameters to use, for each of the two... |
| create_pbd_params_file | Collect all PBD parameters of a 'raket_werper' run and put... |
| create_pbd_sim_out_file | Create the file to store the results of a PBD sim |
| create_raket_params | Create the parameters for one experiment. Run one point of... |
| create_sampling_params_set | Create the set of parameters for the experiment to measure... |
| create_test_params_set | Create the parameter set used in testing |
| create_test_pbd_params | Creates testing PBD params, using create_pbd_params with some... |
| create_test_pbd_paramses | Create testing PBD parameter sets |
| create_test_raket_params | Create a test 'raket_params' |
| create_true_tree_file | Create the file for the true tree |
| default_params_doc | This function does nothing. It is intended to inherit is... |
| get_raket_path | Get the full path of a file in the 'inst/extdata' folder |
| nltt_files_to_csv | Collect all nLTT values from '_nltts.RDa' files |
| rkt_are_viable | Are these viable parameter combinations? |
| rkt_create_data_frame | Create a skeleton data frame for each data set |
| rkt_get_experiment_types | Get the types of experiments. |
| rkt_get_ext_rates | Get the extinction rates used in this research Old values:... |
| rkt_get_max_n_cols | Get the number of columns each dataset must maximally have.... |
| rkt_get_max_n_rows | Get the number of rows each dataset must maximally have.... |
| rkt_get_n_param_combos | Get the number of parameter combinations |
| rkt_get_n_params | Get the number of parameters used in this research, for... |
| rkt_get_n_replicates | Get the number of replicates per parameter combination. This... |
| rkt_get_sampling_methods | Get the sampling methods used |
| rkt_get_spec_init_rates | Get the speciation initiation rates used in this research Old... |
| rkt_is_viable | Is this a viable parameter combination? |
| rkt_run_from_file | Run a 'raket' experiment from a filename |
| run_raket | Run one point of the experiment |
| run_raket_from_file | Run a raket experiment from a filename |
| to_long | Convert a data frame from short to long form |
