Man pages for richelbilderbeek/raket
What If Speciation Takes Time?

create_fig_1Plot violin plot
create_general_params_setCreates the parameter set for the general exploration
create_input_files_generalCreates the parameter files in the article for the general...
create_input_files_implCreates the parameter files in the article for the general...
create_input_files_samplingCreates the parameter files in the article for the general...
create_nltt_fileMeasure the nLTT statistics from a BEAST2 run
create_paramsCreate the parameters for one experiment. Run one point of...
create_params_setCreate the set of parameters to use, for each of the two...
create_posterior_filesProcess an input file
create_sampling_params_setCreate the set of parameters for the experiment to measure...
default_params_docThis function does nothing. It is intended to inherit is...
nltt_files_to_csvCollect all nLTT values from '_nltts.RDa' files
rkt_calc_harm_meanCalculate the harmonic mean of a numeric vector
rkt_create_data_frameCreate a skeleton data frame for each data set
rkt_get_clock_modelsGet the clock models used in this research
rkt_get_experiment_typesGet the two types of experiments, which are 'general' (to...
rkt_get_ext_ratesGet the extinction rates used in this research Old values:...
rkt_get_max_n_colsGet the number of columns each dataset must maximally have....
rkt_get_max_n_rowsGet the number of rows each dataset must maximally have....
rkt_get_n_param_combosGet the number of parameter combinations
rkt_get_n_paramsGet the number of parameters used in this research, for...
rkt_get_n_replicatesGet the number of replicates per parameter combination. This...
rkt_get_sampling_methodsGet the sampling methods used
rkt_get_site_modelsGet the site models used in this research
rkt_get_spec_init_ratesGet the speciation initiation rates used in this research Old...
rkt_is_viableIs this a viable parameter combination?
rkt_runRun one point of the experiment
to_longConvert a data frame from short to long form
richelbilderbeek/raket documentation built on Dec. 15, 2018, 7:14 p.m.