create_raket_params: Create the parameters for one experiment. Run one point of...
In richelbilderbeek/raket: What If Speciation Takes Time?

Create the parameters for one experiment. Run one point of the experiment

create_raket_params(pbd_params, pir_params, sampling_method,
  true_tree_filename = file.path(dirname(pir_params$alignment_params$fasta_filename),
  "pbd.newick"),
  pbd_sim_out_filename = file.path(dirname(pir_params$alignment_params$fasta_filename),
  "pbd_sim_out.RDa"))

`pbd_params`	a PBD parameter set, as returned by `create_pbd_params`
`pir_params`	`pirouette` parameter set, as created by create_pir_params
`sampling_method`	method how the incipient species representing a species is picked. Must be in rkt_get_sampling_methods.
`true_tree_filename`	path to the file to store the true phylogentic tree to. Tree will be stored in Newick format.
`pbd_sim_out_filename`	path to file to save the PBD simulation's output to. Data will be stored as R Data (`.RDa`).