test_that("use", {
# Works locally
if (beastier::is_on_travis()) return()
df <- collect_nltt_stats(
project_folder_name = raztr::get_raztr_path("razzo_project")
)
# Secondary keys
# tree can be can be 'true' (the MBD tree)
# or 'twin' (for the twin BD tree)
expect_true("tree" %in% names(df))
expect_true("best_or_gen" %in% names(df))
# The measurementss
# The collected nLTT statistics, start counting from 1
expect_true("nltt_1" %in% names(df))
expect_true("nltt_2" %in% names(df))
# Use relative folder path as the primary key
#
# E.g. an experiment with its parameter file at either of these locations
#
# /home/richel/razzo_project/data/1/2/3/parameters.RDa
# C:\Giappo\razzo_project\data\1\2\3\parameters.RDa
#
# would get
#
# data/1/2/3 # nolint this is not commented code
#
expect_true("folder" %in% names(df))
# Data must be tidy
expect_true(is.factor(df$tree))
expect_true(is.factor(df$best_or_gen))
# Data must make sense
expect_true(all(df$best_or_gen %in% c("best", "gen")))
expect_true(all(df$nltt_1 >= 0))
# Obsolete values
expect_false("site_model" %in% names(df))
expect_false("clock_model" %in% names(df))
expect_false("tree_prior" %in% names(df))
})
test_that("abuse", {
expect_error(
collect_nltt_stats(
project_folder_name = "nonsense"
),
"'project_folder_name' must end with 'razzo_project'"
)
})
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