doc/install.md

In richelbilderbeek/rbeast2: Control 'BEAST2'

Install

This package describes the babette installation and installation problems.

Install rJava

If you have problems installing rJava, Duck or view my rJava notes.

babette installation

There are two types of babette installations:

• Stable (recommended)
• Bleeding edge

babette assumes that BEAST2 is installed. See below at Install BEAST2 how to install BEAST2.

Stable

babette is on CRAN.

install.packages("babette")

Bleeding endge

• Video how to install babette: download (.mkv) YouTube

babette is installed most easily using the remotes package:

remotes::install_github("ropensci/beautier")
remotes::install_github("ropensci/tracerer")
remotes::install_github("ropensci/beastier")
remotes::install_github("ropensci/mauricer")
remotes::install_github("ropensci/babette")

Install BEAST2

babette assumes that BEAST2 is installed.

If not, one can install BEAST2 from R using beastierinstall:

To install BEAST2:

remotes::install_github("richelbilderbeek/beastierinstall")
beastierinstall::install_beast2()

To install a BEAST2 package, for example, the NS package:

remotes::install_github("richelbilderbeek/mauricerinstall")
mauricerinstall::install_beast2_pkg("NS")

richelbilderbeek/rbeast2 documentation built on Sept. 30, 2023, 9:39 a.m.