#' Collects the number of alignments of all phylogenies belonging to a
#' multiple parameter file in the melted/uncast/long form
#' @param filenames names of the parameter file
#' @return A dataframe with all number of sampled alignments of all files
#' @examples
#' filenames <- c(
#' find_path("toy_example_1.RDa"),
#' find_path("toy_example_3.RDa")
#' )
#' df <- collect_files_n_alignments(filenames)
#' testit::assert(names(df) == c("filename", "n_alignments"))
#' testit::assert(nrow(df) == length(filenames))
#' testit::assert(df$n_alignments == c(2, 4))
#' @export
collect_files_n_alignments <- function(filenames) {
if (length(filenames) < 1) {
stop("there must be at least one filename supplied")
}
# alignments
n_alignments <- NULL
for (filename in filenames) {
this_n_alignments <- NULL
tryCatch(
this_n_alignments <- collect_file_n_alignments(
filename = filename
),
error = function(msg) {} # nolint
)
if (is.null(this_n_alignments)) {
this_n_alignments <- data.frame(
n_alignments = NA
)
}
if (!is.null(n_alignments)) {
n_alignments <- rbind(n_alignments, this_n_alignments)
} else {
n_alignments <- this_n_alignments
}
}
df <- data.frame(
filename = basename(filenames),
n_alignments = n_alignments$n_alignments
)
testit::assert(nrow(df) == length(filenames))
testit::assert(names(df) == c("filename", "n_alignments"))
return(df)
}
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