In rjlopez2/AnlysisOfWaves: Make the Analysis of Ca2+ waves

knitr::opts_chunk$set(
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AnlysisOfWaves

The goal of AnlysisOfWaves is to easily reproduce the analysis of Ca2+ waves in the publication ...

Installation

This package is only available in this git repository. You can install it from GitHub with:

# install.packages("devtools")
devtools::install_github("rjlopez2/AnlysisOfWaves")

Example

This is a basic example which shows you how plot the cumulative occurrence of Ca2+ waves obtained from linescan images:

library(AnlysisOfWaves)

wave_or_EAP_threshold <- 10 # Set time for highlighting the relative wave occurrence.

df_waves_intact_cells %>%
  my_cum_occu_wave_plot_func(reffer_wave_thres = wave_or_EAP_threshold,
                             my_var = "Wave_latency",
                             base_size = 28, line_size = 2)