plot.map2stan: Trace plot of map2stan chains

In rmcelreath/rethinking: Statistical Rethinking book package

Trace plot of map2stan chains

Description

Shows trace plots for Stan samples produced by a map2stan fit, annotated by number of effective samples. Automatic paging and adjustable number of columns and rows per page.

Usage

plot( object , pars , col=rethink_palette , alpha=1 , bg=gray(0.7,0.5) , ask=TRUE , window , n_cols=3 , max_rows=5 , ... )

Arguments

object	map2stan model fit
pars	Character vector of parameters to display
col	Vector of colors to use for chains. Recycled.
alpha	alpha transparency of chains
bg	Background fill for warmup samples
ask	Whether to pause for paging. Default is TRUE.
window	Range of samples to display. Default is all samples.
n_cols	Number of columns per page
max_rows	Maximum number of rows per page
...	Additional arguments to pass to plot commands

Details

This is the default trace plot method for map2stan model fits.

Author(s)

Richard McElreath

rmcelreath/rethinking documentation built on Aug. 26, 2024, 5:54 p.m.