Man pages for rmflight/categoryCompare
Meta-analysis of high-throughput experiments using feature annotations
| breakEdges-methods | Methods for Function 'breakEdges' in Package... |
| categoryCompare-package | Meta-analysis of high-throughput experiments using feature... |
| ccCompare | Comparison of enriched annotations |
| ccCompareCollection-class | Class '"ccCompareCollection"' |
| ccCompareGeneric-methods | Methods for Function 'ccCompareGeneric' in Package... |
| ccCompareResult-class | Class '"ccCompareResult"' |
| ccData | Test data for 'categoryCompare' |
| ccEnrich | Perform annotation enrichment for multiple gene lists |
| ccEnrichCollection-class | Class "ccEnrichCollection" |
| ccEnrichResult-class | Class "ccEnrichResult" |
| ccGeneList-class | Class "ccGeneList" |
| ccOptions-class | Class "ccOptions" |
| ccOutCyt-methods | Methods for Function 'ccOutCyt' in Package 'categoryCompare' |
| ccSigList-class | Class '"ccSigList"' |
| cwReload-methods | Methods for Function 'cwReload' in Package 'categoryCompare' |
| cytOutData-methods | Methods for Function 'cytOutData' |
| cytOutNodes-methods | Methods for Function 'cytOutNodes' |
| fdr | Number of FDR runs to perform |
| GENccEnrichResult-class | Class '"GENccEnrichResult"' |
| getGeneSymbol | Entrez to name, symbol, GO and path conversion, as well as... |
| graphType-methods | graphType |
| HyperGParamsCC-class | Class "HyperGParamsCC" |
| HyperGResultCC-class | Class "HyperGResultCC" |
| hyperGTestCC | Hypergeometric testing with false discovery rate |
| listNames | listNames |
| mergedData-class | Class '"mergedData"' |
| mergeLists-methods | Function 'mergeLists' in Package 'categoryCompare' |
| minCount | minCount |
| minNodes | Delete nodes with less than a certain number of genes... |
| pvalueType | Type of p-values to return from object |
| resetColors-methods | resetColors |
| show-methods | Methods for Function show in Package 'categoryCompare' |
