ccCompareResult-class: Class '"ccCompareResult"'

In rmflight/categoryCompare: Meta-analysis of high-throughput experiments using feature annotations

Class "ccCompareResult"

Description

Holds the results from a single category comparison

Objects from the Class

Objects can be created by calls of the form new("ccCompareResult", ...).

Slots

mainGraph:

Object of class "graph". Holds the graph describing the relationships between the annotations

subGraph:

Object of class "list". Not currently used

mainTable:

Object of class "data.frame". Table of results, with all the various statistics for each annotation in the category

allAnnotation:

Object of class "list". For each annotation, which genes from which comparison are annotated to that particular annotation

categoryName:

Object of class "character". Which category (e.g. GO, KEGG, etc) was used

ontology:

Object of class "character". If GO, which ontology was used

Methods

allAnnotation

signature(object = "ccCompareResult"): ...

mainGraph

signature(object = "ccCompareResult"): ...

mainTable<-

signature(object = "ccCompareResult"): ...

Author(s)

Robert M Flight

See Also

ccCompare ccCompareCollection

Examples

showClass("ccCompareResult")

rmflight/categoryCompare documentation built on April 25, 2024, 11:20 a.m.