getGeneSymbol: Entrez to name, symbol, GO and path conversion, as well as...
In rmflight/categoryCompare: Meta-analysis of high-throughput experiments using feature annotations
getGeneSymbol R Documentation
Entrez to name, symbol, GO and path conversion, as well as general ID to ID conversion.
Description
Get different attributes for the Entrez gene Ids
Usage
getGeneSymbol(id, annPackage)
getGeneName(id, annPackage)
getGO2ALLEGS(id, annPackage)
getPATH2EG(id, annPackage)
getAnnotation(id, annPackage, mapID, doUnlist=TRUE)
Arguments
id
The IDs one wants to get information for.
annPackage
Which annotation package to use.
mapID
Which mapping to use
doUnlist
should the results be unlisted or not?
Details
The type of ID will change depending on the function. For getGene... the ID should be Entrez IDs. For getGO2ALLEGS Gene Ontology IDs should be used, and for getPATH2EG KEGG pathways IDs should be used. For getAnnotation, any ID can be used.
Value
Returns the requested information.
Note
These functions are generally called internally for mapping between genes and various objects.
Author(s)
Robert M Flight
rmflight/categoryCompare documentation built on April 25, 2024, 11:20 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| getGeneSymbol | R Documentation |
Entrez to name, symbol, GO and path conversion, as well as general ID to ID conversion.
Description
Get different attributes for the Entrez gene Ids
Usage
getGeneSymbol(id, annPackage)
getGeneName(id, annPackage)
getGO2ALLEGS(id, annPackage)
getPATH2EG(id, annPackage)
getAnnotation(id, annPackage, mapID, doUnlist=TRUE)
Arguments
id |
The IDs one wants to get information for. |
annPackage |
Which annotation package to use. |
mapID |
Which mapping to use |
doUnlist |
should the results be unlisted or not? |
Details
The type of ID will change depending on the function. For getGene... the ID should be Entrez IDs. For getGO2ALLEGS Gene Ontology IDs should be used, and for getPATH2EG KEGG pathways IDs should be used. For getAnnotation, any ID can be used.
Value
Returns the requested information.
Note
These functions are generally called internally for mapping between genes and various objects.
Author(s)
Robert M Flight
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.