ccData: Test data for 'categoryCompare'

In rmflight/categoryCompare: Meta-analysis of high-throughput experiments using feature annotations

Test data for categoryCompare

Description

Processed data from the estrogen example data set

Usage

data(ccData)

Format

table10: Log-ratio output from limma for the comparison of presence-absence of estrogen at 10 hours

table48: Log-ratio output from limma for the comparison of presence-absence of estrogen at 48 hours

gUniverse: All of the genes measured on the chip

gseaRes: Toy results of GSEA analysis of 3 different tissues

enrichLists: Apply ccEnrich to a ccGeneList from table10 and table48

ccResults: Apply ccCompare to enrichLists

ccResultsBPHier: Modify enrichLists$BP to use a "hierarchical" layout

geneLists: a ccGeneList generated from genes in table10 and table48

ccOpts: a ccOptions object describing what we are going to do as far as feature list comparisons

Author(s)

Robert M Flight

Source

Taken from the estrogen package in Bioconductor, and then processed using the normal affy and limma tools.

See Also

ccGeneList ccEnrichCollection ccCompareCollection ccEnrich ccCompare

Examples

data(ccData)

rmflight/categoryCompare documentation built on April 25, 2024, 11:20 a.m.