enriched_result: the enriched results class

In rmflight/categoryCompare2: Meta-Analysis of High-Throughput Experiments Using Feature Annotations

the enriched results class

Description

given all the slots for an enriched_result, checks that all the data is self-consistent, and creates the enriched_result object.

Usage

hypergeometric_result(features, universe, annotation, statistics)

## S4 method for signature 'enriched_result'
show(object)

hypergeometric_result(features, universe, annotation, statistics)

## S4 method for signature 'binomial_result'
show(object)

Arguments

features	the features that were differentially expressed (see details)
universe	all of the features that were measured
annotation	an annotation object
statistics	a statistical_results object
object	the binomial_result object to show

Value

hypergeometric_result

Slots

annotation

list giving the annotation to feature relationship

statistics

a statistical_results object

features

the significant features

universe

the universe of features

ranks

the ranked features

positivefc

the positive log-fold-changed genes, a vector of class ANY

negativefc

the negative log-fold-changed genes

rmflight/categoryCompare2 documentation built on July 16, 2025, 2:48 p.m.