gocats_to_annotation: gocats to annnotations

In rmflight/categoryCompare2: Meta-Analysis of High-Throughput Experiments Using Feature Annotations

gocats to annnotations

Description

Transforms a gocats ancestors JSON list to a GO annotation object.

Usage

gocats_to_annotation(
  ancestors_file = "ancestors.json",
  namespace_file = "namespace.json",
  annotation_type = "gocatsGO",
  feature_type = "Uniprot",
  feature_translation = NULL
)

Arguments

ancestors_file	the ancestors.json file from gocats (required)
namespace_file	the namespace.json file from gocats (optional)
annotation_type	what annotations are we making? (gocatsGO by default)
feature_type	what type of features are we using (assume Uniprot)
feature_translation	a data.frame used to convert the feature IDs

Value

annotation object

rmflight/categoryCompare2 documentation built on Nov. 18, 2024, 3:50 a.m.