findPedigreeNumber: Determines the generation number for each id.

In rmsharp/nprcmanager: Genetic Tools for Colony Management

Determines the generation number for each id.

Description

One of Pedigree Curation functions

Usage

findPedigreeNumber(id, sire, dam)

Arguments

id	character vector with unique identifier for an individual
sire	character vector with unique identifier for an individual's father (NA if unknown).
dam	character vector with unique identifier for an individual's mother (NA if unknown).

Value

Integer vector indicating generation numbers for each id, starting at 0 for individuals lacking IDs for both parents.

Examples

library(nprcgenekeepr)
library(stringi)
ped <- nprcgenekeepr::lacy1989Ped
ped$gen <- NULL
ped$population <- NULL
ped2 <- ped
ped2$id <- stri_c(ped$id, "2")
ped2$sire <- stri_c(ped$sire, "2")
ped2$dam <- stri_c(ped$dam, "2")
ped3 <- ped
ped3$id <- stri_c(ped$id, "3")
ped3$sire <- stri_c(ped$sire, "3")
ped3$dam <- stri_c(ped$dam, "3")
ped <- rbind(ped, ped2)
ped <- rbind(ped, ped3)
ped$pedigree <- findPedigreeNumber(ped$id, ped$sire, ped$dam)
ped$pedigree

rmsharp/nprcmanager documentation built on Feb. 2, 2025, 12:45 a.m.