getGVPopulation: Get the population of interest for the Genetic Value...

In rmsharp/nprcmanager: Genetic Tools for Colony Management

Get the population of interest for the Genetic Value analysis.

Description

If user has limited the population of interest by defining pop, that information is incorporated via the ped$population column.

Usage

getGVPopulation(ped, pop)

Arguments

ped	the pedigree information in datatable format
pop	character vector with animal IDs to consider as the population of interest. The default is NULL.

Value

A logical vector corresponding to the IDs in the vector of animal IDs provided to the function in pop.

Examples

## Example from Analysis of Founder Representation in Pedigrees: Founder
## Equivalents and Founder Genome Equivalents.
## Zoo Biology 8:111-123, (1989) by Robert C. Lacy
library(nprcgenekeepr)
ped <- data.frame(
id = c("A", "B", "C", "D", "E", "F", "G"),
sire = c(NA, NA, "A", "A", NA, "D", "D"),
dam = c(NA, NA, "B", "B", NA, "E", "E"),
stringsAsFactors = FALSE
)
ped["gen"] <- findGeneration(ped$id, ped$sire, ped$dam)
ped$population <- getGVPopulation(ped, NULL)

rmsharp/nprcmanager documentation built on Feb. 2, 2025, 12:45 a.m.