getLkDirectRelatives: Get the direct ancestors of selected animals

In rmsharp/nprcmanager: Genetic Tools for Colony Management

Get the direct ancestors of selected animals

Description

Gets direct ancestors from labkey study schema and demographics table.

Usage

getLkDirectRelatives(ids, unrelatedParents = FALSE)

Arguments

ids	character vector with Ids.
unrelatedParents	logical vector when FALSE the unrelated parents of offspring do not get a record as an ego; when TRUE a place holder record where parent (sire, dam) IDs are set to NA.

Value

A data.frame with pedigree structure having all of the direct ancestors for the Ids provided.

Examples

 # Requires LabKey connection
library(nprcgenekeepr)
## Have to a vector of focal animals
focalAnimals <- c("1X2701", "1X0101")
suppressWarnings(getLkDirectRelatives(ids = focalAnimals))

rmsharp/nprcmanager documentation built on Feb. 2, 2025, 12:45 a.m.