getProbandPedigree: Gets pedigree to ancestors of provided group leaving...
In rmsharp/nprcmanager: Genetic Tools for Colony Management

Description Usage Arguments Value Examples

Filters a pedigree down to only the ancestors of the provided group, removing unnecessary individuals from the studbook. This version builds the pedigree back in time starting from a group of probands. This will include all ancestors of the probands, even ones that might be uninformative.

1	getProbandPedigree(probands, ped)

`probands`	a character vector with the list of animals whose ancestors should be included in the final pedigree.
`ped`	datatable that is the 'Pedigree'. It contains pedigree information. The fields `sire` and `dam` are required.

A reduced pedigree.

library(nprcgenekeepr)
ped <- nprcgenekeepr::pedWithGenotype
ids <- nprcgenekeepr::qcBreeders
sires <- getPotentialSires(ids, minAge = 1, ped)
head(getProbandPedigree(probands = sires, ped = ped))