meanKinship: Calculates the mean kinship for each animal in a kinship...
In rmsharp/nprcmanager: Genetic Tools for Colony Management
meanKinship R Documentation
Calculates the mean kinship for each animal in a kinship matrix
Description
Part of Genetic Value Analysis
Usage
meanKinship(kmat)
Arguments
kmat
a numeric matrix of pairwise kinship coefficients.
Animal IDs are the row and column names.
Details
The mean kinship of animal i is
MK_i = \Sigma f_ij / N
,
in which the summation is over all animals, j, including the kinship
of animal i to itself.
Value
A named numeric vector of average kinship coefficients for each
animal ID. Elements are named with the IDs from the columns of kmat.
Examples
library(nprcgenekeepr)
ped <- nprcgenekeepr::qcPed
kmat <- kinship(ped$id, ped$sire, ped$dam, ped$gen)
head(meanKinship(kmat))
rmsharp/nprcmanager documentation built on Feb. 2, 2025, 12:45 a.m.
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| meanKinship | R Documentation |
Calculates the mean kinship for each animal in a kinship matrix
Description
Part of Genetic Value Analysis
Usage
meanKinship(kmat)
Arguments
kmat |
a numeric matrix of pairwise kinship coefficients. Animal IDs are the row and column names. |
Details
The mean kinship of animal i is
MK_i = \Sigma f_ij / N
, in which the summation is over all animals, j, including the kinship of animal i to itself.
Value
A named numeric vector of average kinship coefficients for each animal ID. Elements are named with the IDs from the columns of kmat.
Examples
library(nprcgenekeepr)
ped <- nprcgenekeepr::qcPed
kmat <- kinship(ped$id, ped$sire, ped$dam, ped$gen)
head(meanKinship(kmat))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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