rankSubjects: Ranks animals based on genetic value.
In rmsharp/nprcmanager: Genetic Tools for Colony Management

rankSubjects

R Documentation

Ranks animals based on genetic value.

Description

Part of Genetic Value Analysis Adds a column to rpt containing integers from 1 to nrow, and provides a value designation for each animal of "high value" or "low value"

Usage

rankSubjects(rpt)

Arguments

rpt

a list of data.frame (req. colnames: value) containing genetic value data for the population. Dataframes separate out those animals that are imports, those that have high genome uniqueness (gu > 10%), those that have low mean kinship (mk < 0.25), and the remainder.

Value

A list of dataframes with value and ranking information added.

Examples

library(nprcgenekeepr)
finalRpt <- nprcgenekeepr::finalRpt
rpt <- rankSubjects(nprcgenekeepr::finalRpt)
rpt[["highGu"]][1, "value"]
rpt[["highGu"]][1, "rank"]
rpt[["lowMk"]][1, "value"]
rpt[["lowMk"]][1, "rank"]
rpt[["lowVal"]][1, "value"]
rpt[["lowVal"]][1, "rank"]

rmsharp/nprcmanager documentation built on Feb. 2, 2025, 12:45 a.m.