setPopulation: Population designation function

In rmsharp/nprcmanager: Genetic Tools for Colony Management

Population designation function

Description

Part of the pedigree filtering toolset.

Usage

setPopulation(ped, ids)

Arguments

ped	datatable that is the Pedigree. It contains pedigree information. The id column is required.
ids	character vector of IDs to be flagged as part of the population under consideration.

Value

An updated pedigree with the population column added or updated by being set to TRUE for the animal IDs in ped$id and FALSE otherwise.

Examples

examplePedigree <- nprcgenekeepr::examplePedigree
breederPed <- qcStudbook(examplePedigree, minParentAge = 2,
                         reportChanges = FALSE,
                         reportErrors = FALSE)
focalAnimals <- breederPed$id[!(is.na(breederPed$sire) &
                                  is.na(breederPed$dam)) &
                                is.na(breederPed$exit)]
breederPed <- setPopulation(ped = breederPed, ids = focalAnimals)
nrow(breederPed[breederPed$population, ])

rmsharp/nprcmanager documentation built on Feb. 2, 2025, 12:45 a.m.