summary: summary.nprcgenekeeprErr Summary function for class...

In rmsharp/nprcmanager: Genetic Tools for Colony Management

Description

summary.nprcgenekeeprErr Summary function for class nprcgenekeeprErr

Usage

## S3 method for class 'nprcgenekeeprErr'
summary(object, ...)

## S3 method for class 'nprcgenekeeprGV'
summary(object, ...)

Arguments

object	object of class nprcgenekeeprErr and class list
...	additional arguments for the summary.default statement

Value

Object of class summary.nprcgenekeeprErr

object of class summary.nprcgenekeeprGV

Examples

errorList <- qcStudbook(nprcgenekeepr::pedOne, minParentAge = 0,
reportChanges = TRUE,
reportErrors = TRUE)
summary(errorList)



examplePedigree <- nprcgenekeepr::examplePedigree
breederPed <- qcStudbook(examplePedigree, minParentAge = 2,
                         reportChanges = FALSE,
                         reportErrors = FALSE)
focalAnimals <- breederPed$id[!(is.na(breederPed$sire) &
                                  is.na(breederPed$dam)) &
                                is.na(breederPed$exit)]
ped <- setPopulation(ped = breederPed, ids = focalAnimals)
trimmedPed <- trimPedigree(focalAnimals, breederPed)
probands <- ped$id[ped$population]
ped <- trimPedigree(probands, ped, removeUninformative = FALSE,
                    addBackParents = FALSE)
geneticValue <- reportGV(ped, guIter = 50, # should be >= 1000
                         guThresh = 3,
                         byID = TRUE,
                         updateProgress = NULL)
trimmedGeneticValue <- reportGV(trimmedPed, guIter = 50, # should be >= 1000
                                guThresh = 3,
                                byID = TRUE,
                                updateProgress = NULL)
summary(geneticValue)
summary(trimmedGeneticValue)

rmsharp/nprcmanager documentation built on April 24, 2021, 3:13 p.m.