calc_diversity: Calculate cluster sample diversity using Shannon Entropy
In rnabioco/scbp: Boilerplate functions for single cell rna-seq analysis
calc_diversity R Documentation
Calculate cluster sample diversity using Shannon Entropy
Description
Calculate cluster sample diversity using Shannon Entropy
Usage
calc_diversity(obj, sample_id = "orig.ident", group_id = "coarse_clusters")
Arguments
obj
Seurat object
sample_id
column name containing the per sample id
group_id
column name with cluster id
rnabioco/scbp documentation built on July 7, 2023, 10:10 p.m.
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| calc_diversity | R Documentation |
Calculate cluster sample diversity using Shannon Entropy
Description
Calculate cluster sample diversity using Shannon Entropy
Usage
calc_diversity(obj, sample_id = "orig.ident", group_id = "coarse_clusters")
Arguments
obj |
Seurat object |
sample_id |
column name containing the per sample id |
group_id |
column name with cluster id |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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