plot_violins: Make summary violin plots

In rnabioco/scbp: Boilerplate functions for single cell rna-seq analysis

Make summary violin plots

Description

Make summary violin plots

Usage

plot_violins(
  seurat_obj,
  group,
  features,
  split_by = NULL,
  .size = 0.5,
  .width = 1,
  .scale = "width",
  .alpha = 1,
  cols = discrete_palette_default,
  rotate_x_text = TRUE,
  arrange_by_fill = TRUE,
  order_by_input = TRUE
)

Arguments

seurat_obj	seurat object
group	x axis grouping variable
features	features to plot
split_by	additional metadata columns to split violins per group
.size	violin size
.width	violin width
.scale	violin scaling parameter
.alpha	violin alpha
cols	color palette
rotate_x_text	flip x and y
arrange_by_fill	not sure
order_by_input	maintain order of features supplied

rnabioco/scbp documentation built on July 7, 2023, 10:10 p.m.