plot_cell_proportions: Plot cell proportions across each sample

In rnabioco/scbp: Boilerplate functions for single cell rna-seq analysis

Plot cell proportions across each sample

Description

Plot cell proportions across each sample

Usage

plot_cell_proportions(
  obj,
  sample_id = "orig.ident",
  group_id = "coarse_clusters",
  facet_by = NULL,
  summary_boxplot = FALSE,
  return_data = FALSE,
  cols = discrete_palette_default
)

Arguments

obj	Seurat object
sample_id	column name containing the per sample id
group_id	column name with cluster id
facet_by	column name to facet by
summary_boxplot	if TRUE, summarize data with 'facet_by' variable using jittered boxplot
return_data	if TRUE return cell count data with plot as a list
cols	colors

rnabioco/scbp documentation built on July 7, 2023, 10:10 p.m.