write_markers_xlsx: Write marker table to excel for easier perusal by...

In rnabioco/scbp: Boilerplate functions for single cell rna-seq analysis

Write marker table to excel for easier perusal by collaborators

Description

Write marker table to excel for easier perusal by collaborators

Usage

write_markers_xlsx(
  mrkr_list,
  path,
  description_string =
    "Genes differentially expressed between each cluster and all other cells",
  marker_type = NULL
)

Arguments

mrkr_list	list of marker data.frames from Seurat or presto
path	path to output xlsx
description_string	String to add to first excel sheet to describe data . Text is included with scbp::presto_marker_description, scbp::seurat_marker_description, scbp::scran_fm_marker_description (findMarkers), or scran_sm_marker_description (scoreMarkers).
marker_type	one of c("Seurat", "presto", "scran_fm", "scran_sm"), if NULL, will attempt to automatically identify

rnabioco/scbp documentation built on July 7, 2023, 10:10 p.m.