checkBowtie2Version: Check the Bowtie2 executable
In robertdouglasmorrison/DuffyNGS: Duffy Lab NGS Analysis Pipeline for RNA-seq, DNA-seq, ChIP-seq, and RIP-seq
checkBowtie2Version R Documentation
Check the Bowtie2 executable
Description
Checks that the Bowtie2 progam is found, executable, and returns its version number.
Usage
checkBowtie2Version()
getBowtie2Version()
Details
The Bowtie executable can be specified as an environment variable BOWTIE2_PROGRAM
or with an bowtie2Program entry in the DuffyNGS_Options file.
checkBowtie2Version does the complete test of findability, executability, and
returns the version number from Bowtie.
getBowtie2Version just returns the currently stored version number.
Value
The version number as a character string, if successful.
robertdouglasmorrison/DuffyNGS documentation built on March 24, 2024, 4:16 p.m.
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| checkBowtie2Version | R Documentation |
Check the Bowtie2 executable
Description
Checks that the Bowtie2 progam is found, executable, and returns its version number.
Usage
checkBowtie2Version()
getBowtie2Version()
Details
The Bowtie executable can be specified as an environment variable BOWTIE2_PROGRAM
or with an bowtie2Program entry in the DuffyNGS_Options file.
checkBowtie2Version does the complete test of findability, executability, and
returns the version number from Bowtie.
getBowtie2Version just returns the currently stored version number.
Value
The version number as a character string, if successful.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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