checkBowtie2Version: Check the Bowtie2 executable

Description Usage Details Value

Description

Checks that the Bowtie2 progam is found, executable, and returns its version number.

Usage

1
2

Details

The Bowtie executable can be specified as an environment variable BOWTIE2_PROGRAM or with an bowtie2Program entry in the DuffyNGS_Options file.

checkBowtie2Version does the complete test of findability, executability, and returns the version number from Bowtie.

getBowtie2Version just returns the currently stored version number.

Value

The version number as a character string, if successful.


robertdouglasmorrison/DuffyNGS documentation built on Dec. 14, 2018, 3:04 p.m.