compressSpliceMaps: Compress Splice Maps
In robertdouglasmorrison/DuffyNGS: Duffy Lab NGS Analysis Pipeline for RNA-seq, DNA-seq, ChIP-seq, and RIP-seq

compressSpliceMaps

R Documentation

Compress Splice Maps

compress Splice Maps for later use with spliced alignments.

compressSpliceMaps( outPath = NULL, spliceMaps, spliceMapPrefix="SpliceMap")

`outPath`	path for writing the compressed spliceMap files.
`spliceMaps`	a vector of filenames of existing splice maps in text format, as created by `buildSpliceJunctionFiles`.
`spliceMapPrefix`	a character string prefix to combine with the SeqID for naming the new compressed splice junction files.

This turns one potentially very large splice map into fast compressed maps for each SeqID.

Invoked for its side effect of writing files to 'outPath', one for each SeqID in that organism.

Bob Morrison