compressSpliceMaps: Compress Splice Maps

Description Usage Arguments Details Value Author(s) See Also

Description

compress Splice Maps for later use with spliced alignments.

Usage

1
compressSpliceMaps( outPath = NULL, spliceMaps, spliceMapPrefix="SpliceMap")

Arguments

outPath

path for writing the compressed spliceMap files.

spliceMaps

a vector of filenames of existing splice maps in text format, as created by buildSpliceJunctionFiles.

spliceMapPrefix

a character string prefix to combine with the SeqID for naming the new compressed splice junction files.

Details

This turns one potentially very large splice map into fast compressed maps for each SeqID.

Value

Invoked for its side effect of writing files to 'outPath', one for each SeqID in that organism.

Author(s)

Bob Morrison

See Also

spliceToAlign for using these compressed slice maps to resolve splice alignments.


robertdouglasmorrison/DuffyNGS documentation built on Dec. 7, 2018, 8:01 a.m.