clipFastqFile | R Documentation |
Clip (trim) bases from the 5' and/or 3' ends of reads in a FASTQ file
clipFastq(filein, fileout, clip5prime = 0, clip3prime = 0)
filein |
Existing FASTQ file of reads and quality scores |
fileout |
New created FASTQ file with shorter reads and quality scores |
clip5prime |
number of bases to trim from the 5' end (high quality, front) |
clip3prime |
number of bases to trim from the 3' end (low quality, tail) |
Overwrites the new output file if it already exists. Either file may be compressed if the given file suffix ends with .gz
No return value. Creates a new FASTQ file with the same number of reads.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.