fastSeqID2Species: SeqID to SpeciesID Lookup

In robertdouglasmorrison/DuffyTools: Duffy Lab Utility Tools

SeqID to SpeciesID Lookup

Description

Lookup the SpeciesID and location in SeqMap for a set of SeqIDs

Usage

fastSeqID2Species(seqid)

Arguments

seqid

character vector of SeqIDs

Details

Searches all SeqMaps in all defined MapSets, to find the SpeciesID and SeqMap location for the given set of sequence IDs.

Value

A list with 2 elements:

SPECIES	a character vector of the SpeciesID for each SeqID
SMAP_PTR	a integer vector of pointers into the appropriate sequence map for each SeqID

Note

An error occurs if any seqid are not found in any of the defined MapSet annotation.

See Also

MapSets, for a detailed overview of organism annotation.

Examples

  fastSeqID2Species( c("Pf3D7_02", "Hs_grc_11", "LmjF.36", "MT_H37RV_V2"))

robertdouglasmorrison/DuffyTools documentation built on April 16, 2024, 6:31 a.m.