gene2Product: Gene Product Description

Description Usage Arguments Details Value Note Examples

Description

Lookup the description of a gene product from the GeneID

Usage

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gene2Product(gNames)

gene2ProductAllSpecies(gNames, hints = NULL)

Arguments

gNames

character vector of GeneIDs

hints

character vector of gene product descriptions from a secondary source

Details

Finds and extracts the PRODUCT term from the appropriate GeneMap row, for each GeneID.

Value

character vector of length length(gNames), containing the gene product descriptions. Any GeneIDs that are not found return '""'.

Note

gene2Product is fastest, but only searches the current GeneMap (i.e. one species only). gene2ProductAllSpecies is slower, searching all MapSets of species in the current target.

Examples

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  setCurrentSpecies( "Pf3D7")
  gene2Product( c("PFA0620c", "PFL0030c"))

robertdouglasmorrison/DuffyTools documentation built on Dec. 7, 2018, 8:02 a.m.