gene2Product: Gene Product Description

In robertdouglasmorrison/DuffyTools: Duffy Lab Utility Tools

Gene Product Description

Description

Lookup the description of a gene product from the GeneID

Usage

gene2Product(gNames)

gene2ProductAllSpecies(gNames, hints = NULL)

Arguments

gNames	character vector of GeneIDs
hints	character vector of gene product descriptions from a secondary source

Details

Finds and extracts the PRODUCT term from the appropriate GeneMap row, for each GeneID.

Value

character vector of length length(gNames), containing the gene product descriptions. Any GeneIDs that are not found return '""'.

Note

gene2Product is fastest, but only searches the current GeneMap (i.e. one species only). gene2ProductAllSpecies is slower, searching all MapSets of species in the current target.

Examples

  setCurrentSpecies( "Pf3D7")
  gene2Product( c("PFA0620c", "PFL0030c"))

robertdouglasmorrison/DuffyTools documentation built on April 16, 2024, 6:31 a.m.