R/testData.R

In robinweide/tagmeppr: A computational pipeline to map tagmap-insertions

AR = new("GRanges", seqnames = new("Rle", values = structure(c(3L,
                                                               44L, 3L, 44L), .Label = c("chr1", "chr2", "chr3", "chr4", "chr5",
                                                                                         "chr6", "chr7", "chr8", "chr9", "chr10", "chr11", "chr12", "chr13",
                                                                                         "chr14", "chr15", "chr16", "chr17", "chr18", "chr19", "chr20",
                                                                                         "chr21", "chr22", "chrX", "chrY", "chrM", "chr1_gl000192_random",
                                                                                         "chr4_ctg9_hap1", "chr6_apd_hap1", "chr6_cox_hap2", "chr6_dbb_hap3",
                                                                                         "chr6_mann_hap4", "chr6_mcf_hap5", "chr6_qbl_hap6", "chr6_ssto_hap7",
                                                                                         "chr17_ctg5_hap1", "chrUn_gl000219", "chrUn_gl000220", "chrUn_gl000222",
                                                                                         "chrUn_gl000228", "chrUn_gl000232", "chrUn_gl000236", "chrUn_gl000237",
                                                                                         "chrUn_gl000239", "PiggyBacITRs"), class = "factor"), lengths = c(1L,
                                                                                                                                                           1L, 1L, 1L), elementMetadata = NULL, metadata = list()), ranges = new("IRanges",
                                                                                                                                                                                                                                 start = c(194542072L, 1523L, 194542072L, 1523L), width = c(120L,
                                                                                                                                                                                                                                                                                            34L, 120L, 34L), NAMES = NULL, elementType = "ANY", elementMetadata = NULL,
                                                                                                                                                                                                                                 metadata = list()), strand = new("Rle", values = structure(3L, .Label = c("+",
                                                                                                                                                                                                                                                                                                           "-", "*"), class = "factor"), lengths = 4L, elementMetadata = NULL,
                                                                                                                                                                                                                                                                  metadata = list()), seqinfo = new("Seqinfo", seqnames = c("chr1",
                                                                                                                                                                                                                                                                                                                            "chr2", "chr3", "chr4", "chr5", "chr6", "chr7", "chr8", "chr9",
                                                                                                                                                                                                                                                                                                                            "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16",
                                                                                                                                                                                                                                                                                                                            "chr17", "chr18", "chr19", "chr20", "chr21", "chr22", "chrX",
                                                                                                                                                                                                                                                                                                                            "chrY", "chrM", "chr1_gl000192_random", "chr4_ctg9_hap1", "chr6_apd_hap1",
                                                                                                                                                                                                                                                                                                                            "chr6_cox_hap2", "chr6_dbb_hap3", "chr6_mann_hap4", "chr6_mcf_hap5",
                                                                                                                                                                                                                                                                                                                            "chr6_qbl_hap6", "chr6_ssto_hap7", "chr17_ctg5_hap1", "chrUn_gl000219",
                                                                                                                                                                                                                                                                                                                            "chrUn_gl000220", "chrUn_gl000222", "chrUn_gl000228", "chrUn_gl000232",
                                                                                                                                                                                                                                                                                                                            "chrUn_gl000236", "chrUn_gl000237", "chrUn_gl000239", "PiggyBacITRs"
                                                                                                                                                                                                                                                                  ), seqlengths = c(NA_integer_, NA_integer_, NA_integer_, NA_integer_,
                                                                                                                                                                                                                                                                                    NA_integer_, NA_integer_, NA_integer_, NA_integer_, NA_integer_,
                                                                                                                                                                                                                                                                                    NA_integer_, NA_integer_, NA_integer_, NA_integer_, NA_integer_,
                                                                                                                                                                                                                                                                                    NA_integer_, NA_integer_, NA_integer_, NA_integer_, NA_integer_,
                                                                                                                                                                                                                                                                                    NA_integer_, NA_integer_, NA_integer_, NA_integer_, NA_integer_,
                                                                                                                                                                                                                                                                                    NA_integer_, NA_integer_, NA_integer_, NA_integer_, NA_integer_,
                                                                                                                                                                                                                                                                                    NA_integer_, NA_integer_, NA_integer_, NA_integer_, NA_integer_,
                                                                                                                                                                                                                                                                                    NA_integer_, NA_integer_, NA_integer_, NA_integer_, NA_integer_,
                                                                                                                                                                                                                                                                                    NA_integer_, NA_integer_, NA_integer_, NA_integer_, NA_integer_
                                                                                                                                                                                                                                                                  ), is_circular = c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA,
                                                                                                                                                                                                                                                                                     NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA,
                                                                                                                                                                                                                                                                                     NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA,
                                                                                                                                                                                                                                                                                     NA), genome = c(NA_character_, NA_character_, NA_character_,
                                                                                                                                                                                                                                                                                                     NA_character_, NA_character_, NA_character_, NA_character_, NA_character_,
                                                                                                                                                                                                                                                                                                     NA_character_, NA_character_, NA_character_, NA_character_, NA_character_,
                                                                                                                                                                                                                                                                                                     NA_character_, NA_character_, NA_character_, NA_character_, NA_character_,
                                                                                                                                                                                                                                                                                                     NA_character_, NA_character_, NA_character_, NA_character_, NA_character_,
                                                                                                                                                                                                                                                                                                     NA_character_, NA_character_, NA_character_, NA_character_, NA_character_,
                                                                                                                                                                                                                                                                                                     NA_character_, NA_character_, NA_character_, NA_character_, NA_character_,
                                                                                                                                                                                                                                                                                                     NA_character_, NA_character_, NA_character_, NA_character_, NA_character_,
                                                                                                                                                                                                                                                                                                     NA_character_, NA_character_, NA_character_, NA_character_, NA_character_,
                                                                                                                                                                                                                                                                                                     NA_character_)), elementMetadata = new("DataFrame", rownames = NULL,
                                                                                                                                                                                                                                                                                                                                            nrows = 4L, listData = list(readName = new("Rle", values = structure(1:2, .Label = c("M00872:510:000000000-D5VCC:1:1101:23903:25720",
                                                                                                                                                                                                                                                                                                                                                                                                                                 "M00872:510:000000000-D5VCC:1:1102:7081:16943"), class = "factor"),
                                                                                                                                                                                                                                                                                                                                                                                       lengths = c(2L, 2L), elementMetadata = NULL, metadata = list()),
                                                                                                                                                                                                                                                                                                                                                                        beforePad = c(`M00872:510:000000000-D5VCC:1:1101:23903:25720` = FALSE,
                                                                                                                                                                                                                                                                                                                                                                                      `M00872:510:000000000-D5VCC:1:1101:23903:25720` = FALSE,
                                                                                                                                                                                                                                                                                                                                                                                      `M00872:510:000000000-D5VCC:1:1102:7081:16943` = FALSE,
                                                                                                                                                                                                                                                                                                                                                                                      `M00872:510:000000000-D5VCC:1:1102:7081:16943` = FALSE
                                                                                                                                                                                                                                                                                                                                                                        )), elementType = "ANY", elementMetadata = NULL, metadata = list()),
         elementType = "ANY", metadata = list())