computeAllEpistaticChiSquared: Compute chi-squared test statistics for independence
In rohan-shah/mpMap2: Genetic Analysis of Multi-Parent Recombinant Inbred Lines

Description Usage Arguments Details Value

View source: R/computeAllEpistaticChiSquared.R

Compute chi-squared test statistics for independence

1	computeAllEpistaticChiSquared(mpcrossMapped, verbose = TRUE)

`mpcrossMapped`	An object of class `mpcrossMapped` with IBD probability data.
`verbose`	If this is `TRUE` a progress bar is generated

This function computes what are (approximately) chi-squared test statistics for independence of the genotypes at different points on the genome. This computation is done using the IBD probability data. Significant non-independence between IBD probabilities at distant points on the same chromosome, or points on different chromosomes, can indicate non-standard genetic inheritance or selective pressure.

A square matrix with rows and columns corresponding to genetic locations, and values corresponding to test statistics.

rohan-shah/mpMap2 documentation built on July 21, 2020, 8:58 p.m.