getChromosomes: Get chromosome assignment per marker

In rohan-shah/mpMap2: Genetic Analysis of Multi-Parent Recombinant Inbred Lines

Description

Get chromosome assignment per marker from an mpcross object.

Usage

getChromosomes(mpcrossMapped, markers)

Arguments

mpcrossMapped	The object containing the map of interest
markers	The markers for which we want the chromosomes

Details

Extract a character vector, with names corresponding to markers, and values corresponding to the chromosome on which the named marker is located.

Value

A character vector, with names corresponding to markers, and values corresponding to the chromosome on which the named marker is located.

Examples

map <- qtl::sim.map()
pedigree <- f2Pedigree(1000)
cross <- simulateMPCross(map = map, pedigree = pedigree, mapFunction = haldane, seed = 1)
mappedCross <- mpcrossMapped(cross = cross, map = map)
chromosomeAssignment <- getChromosomes(mappedCross, markers(mappedCross))
chromosomeAssignment

rohan-shah/mpMap2 documentation built on July 21, 2020, 8:58 p.m.