hetsForSNPMarkers: Create heterozygote encodings for SNP markers
In rohan-shah/mpMap2: Genetic Analysis of Multi-Parent Recombinant Inbred Lines

Description Usage Arguments Details Value

Create encoding which assumes that the single non-homozygote value for a SNP marker is the heterozygote

1	hetsForSNPMarkers(founders, finals, pedigree)

`founders`	Genetic data for the founding lines of the population
`finals`	Genetic data for the final genotyped lines of the population
`pedigree`	Pedigree for the population. Unused by this particular function.

This function takes in genotype data for the founding lines and the final poulation. It returns an encoding for hetorozygotes for all markers, where multiallelic markers are assumed to have no heterozygotes. For biallelic markers with three observed alleles in the final population, the extra allele is assumed to be the heterozygote.

An object of class hetData, which contains encodings for the marker heterozygotes and the (unique) marker heterozygote

rohan-shah/mpMap2 documentation built on July 21, 2020, 8:58 p.m.