Description Usage Arguments Details Value
View source: R/estimateRFSingleDesign.R
Estimate pairwise recombination fractions, similar to estimateRF
, but with different performance requirements in terms of compute time and storage.
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object |
An object of class |
recombValues |
a vector of test values to use for the numeric maximum likelihood step. Must contain 0 and 0.5, and must have less than 255 values in total. The default value is |
lineWeights |
Values to use to correct for segregation distortion. This parameter should in general be left unspecified. |
keepLod |
Set to |
keepLkhd |
Set to |
verbose |
Output diagnostic information, such as the amount of memory required, and the progress of the computation. |
markerRows |
Used to estimate only a subset of the full matrix of pairwise recombination fractions. |
markerColumns |
Used to estimate only a subset of the full matrix of pairwise recombination fractions. |
Estimate pairwise recombination fractions, similar to estimateRF
, but with different performance requirements in terms of compute time and storage. Specifically, this version is expected to perform better when there is only a single population.
An object of class mpcrossRF
, which contains the original genetic data, and also estimated recombination fraction data.
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