Man pages for ronkeizer/PKPDsim
Simulate ODE models
| add_quotes | Put vector values in quotes |
| add_ruv | Add residual variability to the dependent variable |
| adherence_binomial | Binomial adherence' |
| adherence_markov | Markov adherence' |
| analytical_eqn_wrapper | Wrapper for using analytical equations with PKPD regimens |
| chain | Pipe/chain an object forward into a function call/expression. |
| compile_sim_cpp | Compile ODE model to c++ function |
| covariates_table_to_list | Convert covariate table specified as data.frame Can handle... |
| cv_to_omega | Create lower-diagonal omega matrix from CV for parameter... |
| f_cov | covariate function builder |
| get_ode_model_size | Get the number of states in the ODE from the code code C++... |
| get_parameters_from_code | Get model parameters from code |
| get_t_obs_from_regimen | Extract sensible default observation times from a specified... |
| github_download | Download a single file from GitHub, or get list of files |
| join_regimen | Join two dosing regimens |
| model_from_api | Load model definition from API, and compile to R library |
| model_library | Model library |
| mvrnorm2 | More powerful multivariate normal sampling function |
| new_adherence | Adherence function |
| new_covariate | New covariate |
| new_covariate_model | covariate model function |
| new_ode_model | Create new ODE model |
| new_regimen | Dose regimen for sim_ode |
| nm_to_regimen | Create a regimen from NM data |
| parse_regimen | Parse regimen |
| pkdata | PK dataset |
| print_list | Return a list in R syntax |
| print.PKPDsim | Print function for PKPDsim simulation function |
| print.regimen | Print function for PKPDsim regimen |
| regimen_to_nm | Convert PKPDsim regimen to NONMEM table (doses only) |
| search_replace_in_file | Find string and replace in file |
| shift_state_indices | R starts counting vector indices at 1, c++ starts at 0, so... |
| sim | Simulate ODE or analytical equation |
| sim_core | Only core function of the simulation function, always just... |
| sim_ode | Deprecated function, renamed to 'sim()' |
| sim_ode_shiny | Simulate ODE and create a Shiny app |
| test_pointer | Test if model still in memory |
| triangle_to_full | Convert triangle omega matrix to full omega matrix |
