compile_sim_cpp: Compile ODE model to c++ function

In ronkeizer/PKPDsim: Simulate ODE models

Description

Compile ODE model to c++ function

Usage

compile_sim_cpp(code, dose_code, pk_code, size, p, cpp_show_code,
  code_init = NULL, state_init = NULL, declare_variables = NULL,
  variables = NULL, covariates = NULL, obs = NULL, dose = NULL,
  compile = TRUE, verbose = FALSE, as_is = FALSE)

Arguments

code	C++ code ODE system
dose_code	C++ code per dose event
pk_code	C++ code per any event (similar to $PK)
size	size of ODE system
p	parameters (list)
cpp_show_code	show output c++ function?
code_init	code for initialization of state
state_init	state init vector
declare_variables	variable declaration for all required variables (including user-specified)
variables	only the user-specified variables
covariates	covariates specification
obs	observation specification
dose	dose specification
compile	compile or not?
verbose	show more output
as_is	use C-code as-is, don't substitute line-endings or shift indices

ronkeizer/PKPDsim documentation built on May 27, 2019, 1:50 p.m.