README.md

beautier

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DOI

beautier is BEAUti for R.

beautier logo

The purpose of beautier is to create a valid BEAST2 XML input file from its function arguments. In this way, a scientific pipeline using BEAST2 can be fully scripted, instead of using BEAUti's GUI.

beautier is part of the babette package suite:

Related R packages:

Examples

See examples.

Installation

If you use the devtools R package, this is easy:

devtools::install_github("ropensci/beautier")

FAQ

See FAQ.

Supported

Missing features/unsupported

beautier cannot do everything BEAUti can.

Here are some missing or (yet) unsupported features:

There is a feature I miss

See CONTRIBUTING, at Submitting use cases

I want to collaborate

See CONTRIBUTING, at 'Submitting code'

I think I have found a bug

See CONTRIBUTING, at 'Submitting bugs'

There's something else I want to say

Sure, just add an Issue. Or send an email.

External links

References

Article about babette:

FASTA files anthus_aco.fas and anthus_nd2.fas from:

FASTA file G_VII_pre2003_msa.fas from:

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ropensci/beautier documentation built on May 14, 2019, 8:52 p.m.