are_mrca_align_ids_in_fasta: Determine if the MRCA priors' alignment IDs are present in...

In ropensci/beautier: 'BEAUti' from R

Determine if the MRCA priors' alignment IDs are present in the FASTA files

Description

Determine if the MRCA priors' alignment IDs are present in the FASTA files

Usage

are_mrca_align_ids_in_fasta(mrca_prior, fasta_filename)

Arguments

mrca_prior	a Most Recent Common Ancestor prior, as returned by create_mrca_prior
fasta_filename	a FASTA filename. Use get_fasta_filename to obtain a testing FASTA filename. Note that BEAST2 also supports missing data, by using a dash (-) or question mark (?) as a sequence.

Value

TRUE if all the MRCA priors' alignment IDs are present in the FASTA files. Returns FALSE otherwise

Author(s)

Richèl J.C. Bilderbeek

ropensci/beautier documentation built on April 2, 2024, 5:01 a.m.