ccp_tree_prior_to_xml_state: Convert a CCP tree prior to the XML as part of the 'state'...

In ropensci/beautier: 'BEAUti' from R

Convert a CCP tree prior to the XML as part of the state section

Description

Convert a CCP tree prior to the XML as part of the state section

Usage

ccp_tree_prior_to_xml_state(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

XML as text

Examples

check_empty_beautier_folder()

# Need an ID and inital value
inference_model <- create_inference_model(
  tree_prior = create_ccp_tree_prior(
    id = "anthus_nd2_sub",
    pop_size_distr = create_normal_distr(
      id = 123,
      value = 3.14
    )
  )
)

ccp_tree_prior_to_xml_state(inference_model)

check_empty_beautier_folder()

ropensci/beautier documentation built on July 9, 2024, 6:14 a.m.