is_txid_in_sq | R Documentation |
Checks if given txid is represented by sequence by looking at sequence source organism's lineage.
is_txid_in_sq(phylota, txid, sid)
phylota |
Phylota |
txid |
Taxonomic ID |
sid |
Sequence ID |
boolean
Other tools-public:
calc_mad()
,
calc_wrdfrq()
,
drop_by_rank()
,
drop_clstrs()
,
drop_sqs()
,
get_clstr_slot()
,
get_nsqs()
,
get_ntaxa()
,
get_sq_slot()
,
get_stage_times()
,
get_tx_slot()
,
get_txids()
,
is_txid_in_clstr()
,
list_clstrrec_slots()
,
list_ncbi_ranks()
,
list_seqrec_slots()
,
list_taxrec_slots()
,
plot_phylota_pa()
,
plot_phylota_treemap()
,
read_phylota()
,
write_sqs()
data(tinamous)
sid <- tinamous@sids[[1]]
sq <- tinamous[[sid]]
txid <- sq@txid
# expect true
is_txid_in_sq(phylota = tinamous, txid = txid, sid = sid)
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