read_phylota: Generate a Phylota object in R

In ropensci/phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'

Generate a Phylota object in R

Description

Creates a Phylota object containing information on clusters, sequences and taxonomy from the working directory of a completed pipeline.

Usage

read_phylota(wd)

Arguments

wd	Working directory

Value

Phylota

See Also

Other tools-public: calc_mad(), calc_wrdfrq(), drop_by_rank(), drop_clstrs(), drop_sqs(), get_clstr_slot(), get_nsqs(), get_ntaxa(), get_sq_slot(), get_stage_times(), get_tx_slot(), get_txids(), is_txid_in_clstr(), is_txid_in_sq(), list_clstrrec_slots(), list_ncbi_ranks(), list_seqrec_slots(), list_taxrec_slots(), plot_phylota_pa(), plot_phylota_treemap(), write_sqs()

Examples

## Not run: 
  
  # Note, this example requires a wd with a completed phylotaR run
  phylota <- read_phylota(wd)

## End(Not run)

ropensci/phylotaR documentation built on July 9, 2023, 3:17 p.m.