examples/taxrec-class.R
In ropensci/phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'
data('aotus')
taxrec <- aotus@txdct@recs[[aotus@txdct@txids[[1]]]]
# this is a TaxRec object
# it contains NCBI's taxonomic information for a single node
show(taxrec)
# you can access its different data slots with @
taxrec@id # taxonomic ID
taxrec@scnm # scientific name
taxrec@cmnm # common name, '' if none
taxrec@rnk # rank
taxrec@lng # lineage information: list of IDs and ranks
taxrec@prnt # parent ID
ropensci/phylotaR documentation built on July 9, 2023, 3:17 p.m.
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data('aotus')
taxrec <- aotus@txdct@recs[[aotus@txdct@txids[[1]]]]
# this is a TaxRec object
# it contains NCBI's taxonomic information for a single node
show(taxrec)
# you can access its different data slots with @
taxrec@id # taxonomic ID
taxrec@scnm # scientific name
taxrec@cmnm # common name, '' if none
taxrec@rnk # rank
taxrec@lng # lineage information: list of IDs and ranks
taxrec@prnt # parent ID
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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